PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3752_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 572aa    MW: 62766.8 Da    PI: 6.1566
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3752_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.39.4e-26123224199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd+++ g +++p+ +a+++         ++ +  tl+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+vvF+  ++s+
  Neem_3752_f_1 123 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqADPPVQ--TLSVTDIHGAVWEFRHIYRGTPRRHLLTTGWSKFVNQKKLIAGDSVVFM--RDSG 214
                    89*********************999****995444444..9************************************************..5699 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    ++++v+++r+
  Neem_3752_f_1 215 GKMFVGLRRS 224
                    *******986 PP

2Auxin_resp80.53.8e-27254335383
     Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    ++a  + +FevvY+Pra++++F+v++e v +a++v +++GmR+km +etedss+ ++ +Gtv++ s  d   W +S+W +L+
  Neem_3752_f_1 254 ERAVLGLPFEVVYYPRAGWADFIVNAEVVDAAMRVLWTAGMRVKMVVETEDSSRMTWvQGTVTAASVPDRGPWCGSPWGMLE 335
                    56667889**********************************************************************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-29117232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-34122225IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.872123225IPR003340B3 DNA binding domain
CDDcd100171.41E-20123223No hitNo description
PfamPF023623.1E-23123224IPR003340B3 DNA binding domain
SMARTSM010193.5E-22123225IPR003340B3 DNA binding domain
PfamPF065071.3E-24253334IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MPLQHHSSPS EPCAVDPRVW RSCAGSSVQI PTVNSRVYYF PQGHVEQSCP SIAVSVSKPV  60
IPCVISHVDF MADPITDQVF AKVLLSPITA VEPSRNFLDQ QQQRQRHPQR GNGSVDENGV  120
VAFAKILTPS DANNGGGFSV PRFCADSIFP PLNYQADPPV QTLSVTDIHG AVWEFRHIYR  180
GTPRRHLLTT GWSKFVNQKK LIAGDSVVFM RDSGGKMFVG LRRSVKYGNN GDGATARWRE  240
QIGIKAESVV EAVERAVLGL PFEVVYYPRA GWADFIVNAE VVDAAMRVLW TAGMRVKMVV  300
ETEDSSRMTW VQGTVTAASV PDRGPWCGSP WGMLEVTWDE PEILQNAKRV SPWQIEFVSP  360
TRPLHTTFPQ AKRPKFPQNC GSVTDGEEEI FFPVTGLTNS TVGYLDPSLL NYNTFPAGMQ  420
GARQNPFSLF SLSNFISENN HQMCSDGTVG NHMVPKLRRV STELNIGSSQ SDNLSPDSHS  480
SVHSFGAELG NQGCNSTKVG VSSIQLFGKI IHMKQPIEGG FDDVCPEDDG GKGFNGREDV  540
NVPLDLSLTY TELLNRFGMQ SGSEVEAEAC TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-67135637388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434090.10.0hypothetical protein CICLE_v10000693mg
RefseqXP_006434091.10.0hypothetical protein CICLE_v10000693mg
RefseqXP_006434092.10.0hypothetical protein CICLE_v10000693mg
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A067GQ760.0A0A067GQ76_CITSI; Auxin response factor
STRINGPOPTR_0002s09050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-178auxin response factor 17